1. Next-Gen Sequence Analysis Workshop (2018)

These are the schedule and classroom materials for the ANGUS workshop at UC Davis, which will run from July 2nd to July 14th, 2018. ANGUS is part of the 2018 Data Intensive Biology Summer Institute.

This workshop runs under a Code of Conduct. Please respect it and be excellent to each other!

Twitter hash tag: #dibsi2018

1.1. Rooms and lead instructors!

There are three rooms - Lions, Tigers and Bears!

Lions will be ably led by Dr. Elijah Lowe and Adam Orr, in 1041 Valley.

Tigers will enjoy the leadership of Dr. Amanda Charbonneau and Dr. Fotis Psomopoulos, in 1043 Valley.

Dr. Tristan De Buysscher and Lisa Johnson will lead Da Bears through the forest, in 1047 Valley.

1.2. Schedule, in brief:

Monday 7/2:

Tuesday:

  • morning speaker: Titus (slides)
  • 9am-noon - lab/lecture/instruction
  • noon-1:15 - lunch break (lunch on your own)
  • 1:15-5:30pm - tutorials
    • continued from above.

Wednesday 7/4:

Thursday:

Friday:

1.3. Second week, July 9-July 14.

Monday

Tuesday:

  • 9-10am: morning speaker: Erich Schwarz (slides)
  • 10:15am-noon - ChIP-seq and UCSC pileup
  • noon-1:15 - lunch break (lunch on your own)
  • 1:15:3pm - transcriptome annotation
  • 3:15pm-5:30pm - topic specific breakouts
    • Microbial ecology & microbiome (Mike & Sabah) notes here
    • Non-model -omics (Elijah and Lisa)
    • Model organisms (Erich, Rocio)notes
    • Population genetics / comparative genomics / GWAS (Shannon, Kat, Elias)
    • Work on your own (Adam)
  • 5:30pm-7:30pm - dinner (on your own)
  • 7:30-9pm: posters & ice cream session

Wednesday:

Thursday:

  • 9-10am: morning speaker: Sam Diaz-Munoz
  • 10:30am-12:15pm:
  • 12:30pm-1:30 - lunch (lunch on your own)
  • 1:30-3:15pm:
  • 3:15-3:45pm: Tea Time! Photos!
  • 3:45pm-5:30pm - lab/lecture/instruction
    • lions: snakemake (titus)
    • tigers: Torsten tutorial
    • bears: Next steps working group

Friday:

Saturday -

(check out of your rooms and bring luggage over)

Please bring your computer on Saturday.

  • 9am: Titus Brown, title: What does the future hold in a world of infinite data?
  • 10:15am:
    • “one up/one down” assessment (in each room)
    • DIBSI ‘19 organizational meeting (helpers & instructors) - 1030
  • 11am:
    • report back
    • thanks and fare-thee-well!