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Calculating k-mer abundance distributions
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.. Warning:: These documents are not maintained and their instructions may be
	out of date. However the GED Lab does maintain the `khmer protocols
	<http://khmer-protocols.readthedocs.org/>`__ which may cover similar
	topics. See also the `installation instructions for the current version
	of the khmer project <https://khmer.readthedocs.org/en/latest/install.html>`__. 

Start up an m1.large.

Install screed::

   cd /usr/local/share
   git clone https://github.com/ged-lab/screed.git
   cd screed
   python setup.py install

Install khmer::

   cd /usr/local/share
   git clone https://github.com/ged-lab/khmer.git
   cd khmer
   make

Then, grab the following IPython Notebook::

   cd /usr/local/notebooks
   curl -O https://raw.github.com/ngs-docs/ngs-notebooks/master/ngs-5x-kmer-abundance-distributions-2013.ipynb

Now, go to your IPython Notebook interface (https:// + machine name)
and open the notebok 'ngs-5x-kmer-abundance-distributions-2013.ipynb'.