Genome Wide Association Studies¶

Lesson notes:

We will be working on Amazon EC2, so here’s what we need to set that up:

https://github.com/ngs-docs/SKAT_NGS-2015/blob/master/Setup-for-gwas-on-EC2.md

These notes are to do the analysis:

https://github.com/ngs-docs/SKAT_NGS-2015/blob/master/NGS_GWAS_via_SKAT.md

Extra reading/documentation:

SKAT R package documentation: https://cran.r-project.org/web/packages/SKAT/SKAT.pdf
SKAT paper: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3135811/pdf/main.pdf

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