BASH for GenomicsΒΆ
We’re going to go through several functions of the SHELL using various genomics file types.
- Getting your project started
- Download and Test
- Working with Compressed files
- The Shell
- Learning Objectives
- What is the shell?
- Information on the shell
- Starting with the shell
- Arguments
- The Unix directory file structure (a.k.a. where am I?)
- Moving around the file system
- Examining the contents of other directories
- Full vs. Relative Paths
- Saving time with shortcuts, wild cards, and tab completion
- Command History
- Examining Files
- Creating, moving, copying, and removing
- Writing files
- Datafiles and Scripting
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