FastQCFastQC Report
Wed 10 Jul 2019
BCep_R1_paired.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameBCep_R1_paired.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1214720
Sequences flagged as poor quality0
Sequence length140-151
%GC67

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGAAC5202.8047414E-411.089581145
ACGTCTG6751.3097633E-76.4073133145
GTCTGAA4955.2171345E-76.3096647140-144
GTACACG15400.0010782576.07785468
CGTCTGA5503.4155655E-65.678699140-144
CACGTCT6503.595287E-75.5258107140-144
GCCACGA17000.0035028675.50604771
ATCGGAA12550.05.47508140-144
AAGAGCA8306.640403E-85.080041140-144
Produced by FastQC (version 0.11.5)