FastQCFastQC Report
Wed 10 Jul 2019
B_cepacia_raw_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameB_cepacia_raw_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2500000
Sequences flagged as poor quality0
Sequence length151
%GC68

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGACG2100.00643564856.9051547125-129
CTACAAC13400.0013972826.4931671
TACAACG14200.00268367966.12723262
TCACTAA3450.0038439225.463992130-134
CTAATCG4150.00108787855.241053135-139
GTCGGAA20150.004271695.0377091
Produced by FastQC (version 0.11.5)