Technical guide to the ANGUS course

Packages we install


apt-get update
apt-get -y install screen git curl gcc make g++ python-dev unzip \
        default-jre pkg-config libncurses5-dev r-base-core \
        r-cran-gplots python-matplotlib sysstat samtools python-pip \

Creating your own AMI

Boot up the machine you want (Ubuntu 14.04 LTS PV is what we used in 2014), then run the apt-get commands above. Shut it down, and then follow these instructions:

I usually name them something like ‘2014-08-03 ubuntu 14.04 angus’, with ‘v1’, ‘v2’, ‘v3’ on the end of 03 (e.g. 2014-08-03.v1) just so I can sort them more easily.

At the end of this, you should be able to boot it up and run the apt-get commands, above, and have them complete instantly (beacuse it’s up to date)

Be sure to make it public! (Actions... Modify Image permissions under AMI menu).

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