Command-line and RStudioΒΆ

Overview and discussion of the previous three lessons:

(Running BLAST at the command line, Running large scale BLASTs and output., Visualizing BLAST score distributions in RStudio)

The Software Carpentry shell lesson is good for people to go through, either collectively or individually.

Questions to discuss and address:

  • where are the files and directories that we are accessing at the shell?
  • where are the files and directories that we are accessing via RStudio Web?
  • related: why am I using R via a Web interface rather than on my local computer?

We will cover more R on Thursday morning, where we will go through Manipulating and analyzing data with dplyr.