1. Next-Gen Sequence Analysis Workshop (2018)

These are the schedule and classroom materials for the ANGUS workshop at UC Davis, which will run from July 2nd to July 14th, 2018. ANGUS is part of the 2018 Data Intensive Biology Summer Institute.

This workshop runs under a Code of Conduct. Please respect it and be excellent to each other!

Twitter hash tag: #dibsi2018

1.1. Rooms and lead instructors!

There are three rooms - Lions, Tigers and Bears!

Lions will be ably led by Dr. Elijah Lowe and Adam Orr, in 1041 Valley.

Tigers will enjoy the leadership of Dr. Amanda Charbonneau and Dr. Fotis Psomopoulos, in 1043 Valley.

Dr. Tristan De Buysscher and Lisa Johnson will lead Da Bears through the forest, in 1047 Valley.

1.2. Schedule, in brief:

Monday 7/2:


  • morning speaker: Titus (slides)
  • 9am-noon - lab/lecture/instruction
  • noon-1:15 - lunch break (lunch on your own)
  • 1:15-5:30pm - tutorials
    • continued from above.

Wednesday 7/4:



1.3. Second week, July 9-July 14.



  • 9-10am: morning speaker: Erich Schwarz (slides)
  • 10:15am-noon - ChIP-seq and UCSC pileup
  • noon-1:15 - lunch break (lunch on your own)
  • 1:15:3pm - transcriptome annotation
  • 3:15pm-5:30pm - topic specific breakouts
    • Microbial ecology & microbiome (Mike & Sabah) (notes)
    • Non-model -omics (Elijah and Lisa)
    • Model organisms (Erich, Rocio) (notes)
    • Population genetics / comparative genomics / GWAS (Shannon, Kat, Elias)
    • Work on your own (Adam)
  • 5:30pm-7:30pm - dinner (on your own)
  • 7:30-9pm: posters & ice cream session



  • 9-10am: morning speaker: Sam Diaz-Munoz
  • 10:30am-12:15pm:
  • 12:30pm-1:30 - lunch (lunch on your own)
  • 1:30-3:15pm:
  • 3:15-3:45pm: Tea Time! Photos!
  • 3:45pm-5:30pm - lab/lecture/instruction


  • 9-10am: morning speaker: Luis Carvajal (slides will not be posted)

  • 10:30am-12:15pm:

  • 12:30pm-1:30 - lunch (lunch on your own)

  • 1:30-3:15pm: breakout tutorials!! locations TBD.

    • Amplicon & microbial ecology (Mike and Sabah)

      • work with practice data or your own data!
      • we will be there for individual/group help/discussion, installing tools trouble, etc. :)
    • Some more R, Shiny, and the tidyverse (Amanda and Rocio)

    • More UNIX shell (Fotis)

    • Comparative microbial genomics (Torsten)

  • 3:15-3:45pm: Tea Time!

  • 3:45-5:30pm - lab/lecture/instruction

Saturday -

(check out of your rooms and bring luggage over)

Please bring your computer on Saturday.